Plant GARDEN
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TOP > About the Species(Nicotiana tabacum var. TN90) > genome data >Gene sequences

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SNP Detection
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Data List

All Markers Trait-Related Loci
Nicotiana tabacum

CDS Sequence

CDS ID

lcl|NW_015924548.1_cds_XP_016472880.1_65066
CDS Infomation

[gene=LOC107794853] [db_xref=GeneID:107794853] [protein=root phototropism protein 3-like] [protein_id=XP_016472880.1] [location=complement(join(9554..10099,10761..12053,12152..12221,12373..12485))] [gbkey=CDS]
Sequence

ATGTGGGAATCAGAGACTGAGTCTGTTAGTGGAAGAGACTATGGGAATGGAGTTCTCAGC
AGTACCAAACATGGAGTCAAGACTGATGGTTTTGAGCAAAAAGGACAGTCTTGGTATGTA
GCAACTGATATCCCCAGTGACCTTTTAGTTCAAATTGGAGATGTTAGTTTCCACTTACAC
AAGTATCCTTTGCTTTCTAGAAGTGGAAAGATGAACAGAATCATATATGACTCAAGGGAT
GAAGAATTGAGCAAAATAGTTATAGATGACCTACCAGGTGGACCTGAGGCATTTGAGTTA
GCTGCAAAGTTCTGCTATGGAATTGCTGTTGATCTCACAGCAACCAATATCTCCGGCCTA
CGTTGTGCAGCAGAGTACCTAGAAATGACTGAGGACTTAGAAGAAGGAAACCTTATATTC
AAGACTGAAGCTTTCCTCAGCTATGTGGTTTTATCATCATGGAGAGACTCCATACTGGTA
TTGAAGAGTTGTGCCAAGTTATCACCATGGGCAGAAAACCTCCAAATCGTTCGAAGATGC
AGCGAGTCCATCGCTTGGAAAGCCTGCGCCAATCCAAAAGGAATAAAATGGCAATACACA
GGCAAACACCCTAATGTTTCCAGCCCAAAATGGAACGAAATGAAGGATTCTAGCCCGAGC
AGAAACCAGCAAGTAGTACCTCCTGATTGGTGGTTTGAAGATGTGTCTATTCTCAGGATT
GATCACTTTGTCAGAGTGATTACTGCTATTAAGGTAAAGGGTATGAGACATGAACTAATT
GGTGCTGCCCTTATGCACTATGCTGCTAAATGGCTCCCGGGCCTAATTAAAGAAGGATCA
GGATCGTCGGATGAAGGTAGCAATAGCAATAATAGTAATGGCAGTAGTAGCAATAGTTGG
AAAGGGGGTCTTCATATGATAGTGTCAGGAACTAGAGATGAAGTACCAAGTGTTCAGGCC
AAAGATCAAAGGATGATTATCGAAAGCCTAATTAGCATAATCCCACAACAGAAGGACAGC
GTCTCGTGTAGCTTCCTTCTTCGTCTTTTGAGAATGGCAAACCTGTTGAAAGTGGCTCCT
GCTCTTGTGACAGAATTGGAGAAACGAGTCGGGATGCAATTTGAGCAGGCTACATTGGCT
GATCTTCTCATACCGTCCTATAATAAGACCGACACCTTGTACGATGTTGATCTTGTTCAG
AGGCTTTTGGAACATTTCTTAGTTCAAGAACAGACAGAAGGTTCAAGCCCCAGTAGAAGT
TCATTCTCCGATAAACATATGCATGATGGAAATCAAAGGGGTAGCAATCTCAATGCTAAG
ATGAGAGTAGCAAGGCTTGTGGACAGTTACCTCACAGAAGTATCCAGAGATAGAAATCTT
TCCTTGACAAAATTTCAGGTCTTGGCAGAGGCTTTGCCGGAATCAGCAAGAACTTGTGAT
GATGGATTATATCGAGCAATTGATTCCTATCTTAAGGCCCATCCAACTCTCTCCGAACAT
GAGAGAAAGCGGCTGTGCAGGGTGATGGACTGCCAGAAACTCTCTATTGATGCTTGCATG
CACGCTGCTCAGAACGAACGGCTCCCACTAAGAGTAGTGGTGCAAGTCCTATTTTCTGAG
CAGGTGAAGATCAGCAATGCAATATCCAACAACTCACTCAAAGATGCAGGAGATTCTCAT
TATCAGCCTCTGGTATCAAACCGCAAATCATTGCTCGAAGCAACACCACAATCATTTCAA
GAGGGATGGACTACAGCCAAGAAAGACATCAATACTCTTAAGTTTGAACTCGAGACTGTG
AAAACTAAGTACCTAGAACTCCAAAACGACATGGATAGCTTACAAAGACAGTTTGATAAG
ATCACAAAGCCAAAGCAATCCTCGGCATGGACTTCAGGGTGGAAAAAGTTAAGCAAGCTC
ACCAAGATGACAAATTTAGAATCCCATGAAATTGGTTCGCAGGTCCCAAATGCTGAACTG
ACAAGGAAGACACCTAGAAGATGGAGAAATTCCATTTCCTGA

Peptide Sequence

PEP ID

XP_016472880.1
PEP Infomation

PREDICTED: root phototropism protein 3-like [Nicotiana tabacum]
Sequence

MWESETESVSGRDYGNGVLSSTKHGVKTDGFEQKGQSWYVATDIPSDLLVQIGDVSFHLH
KYPLLSRSGKMNRIIYDSRDEELSKIVIDDLPGGPEAFELAAKFCYGIAVDLTATNISGL
RCAAEYLEMTEDLEEGNLIFKTEAFLSYVVLSSWRDSILVLKSCAKLSPWAENLQIVRRC
SESIAWKACANPKGIKWQYTGKHPNVSSPKWNEMKDSSPSRNQQVVPPDWWFEDVSILRI
DHFVRVITAIKVKGMRHELIGAALMHYAAKWLPGLIKEGSGSSDEGSNSNNSNGSSSNSW
KGGLHMIVSGTRDEVPSVQAKDQRMIIESLISIIPQQKDSVSCSFLLRLLRMANLLKVAP
ALVTELEKRVGMQFEQATLADLLIPSYNKTDTLYDVDLVQRLLEHFLVQEQTEGSSPSRS
SFSDKHMHDGNQRGSNLNAKMRVARLVDSYLTEVSRDRNLSLTKFQVLAEALPESARTCD
DGLYRAIDSYLKAHPTLSEHERKRLCRVMDCQKLSIDACMHAAQNERLPLRVVVQVLFSE
QVKISNAISNNSLKDAGDSHYQPLVSNRKSLLEATPQSFQEGWTTAKKDINTLKFELETV
KTKYLELQNDMDSLQRQFDKITKPKQSSAWTSGWKKLSKLTKMTNLESHEIGSQVPNAEL
TRKTPRRWRNSIS

Transcript Sequence

Gene sequence data has not been registered.